Detailed information of SNP:
|
SNP ID:
sf0900498731(Gbrowse)
Chromosome: chr09 Position: 498731 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 91.48% | 8.52% |
| All Indica | 777 | 85.07% | 14.93% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 84.02% | 15.98% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 201 | 75.62% | 24.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900498731 | G->A | INTERGENIC | None |