Detailed information of SNP:
|
SNP ID:
sf0900512558(Gbrowse)
Chromosome: chr09 Position: 512558 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 97.08% | 2.92% |
| All Indica | 788 | 96.19% | 3.81% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 94.28% | 5.72% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900512558 | G->A | INTERGENIC | None |