Detailed information of SNP:
|
SNP ID:
sf0900522591(Gbrowse)
Chromosome: chr09 Position: 522591 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 94.16% | 5.84% |
| All Indica | 758 | 90.90% | 9.10% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 357 | 92.72% | 7.28% |
| Indica II | 202 | 92.08% | 7.92% |
| Indica Intermediate | 199 | 86.43% | 13.57% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900522591 | A->C | LOC_Os09g01750(LOC_Os09g01750.1) | Synonymous |