Detailed information of SNP:
|
SNP ID:
sf0900527417(Gbrowse)
Chromosome: chr09 Position: 527417 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 73.17% | 26.83% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 468 | 35.90% | 64.10% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 310 | 45.48% | 54.52% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 64 | 32.81% | 67.19% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900527417 | A->G | LOC_Os09g01760(LOC_Os09g01760.1) | INTRON |