Detailed information of SNP:
|
SNP ID:
sf0900533728(Gbrowse)
Chromosome: chr09 Position: 533728 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 91.78% | 8.22% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 491 | 83.91% | 16.09% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 330 | 81.52% | 18.48% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900533728 | G->A | LOC_Os09g01770(LOC_Os09g01770.1) | Synonymous |