Detailed information of SNP:
|
SNP ID:
sf0900548563(Gbrowse)
Chromosome: chr09 Position: 548563 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 64.54% | 35.46% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 489 | 4.70% | 95.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 327 | 5.20% | 94.80% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900548563 | A->G | INTERGENIC | None |