Detailed information of SNP:
|
SNP ID:
sf0900560007(Gbrowse)
Chromosome: chr09 Position: 560007 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 59.40% | 40.60% |
| All Indica | 748 | 91.98% | 8.02% |
| All Japonica | 488 | 6.35% | 93.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 346 | 91.91% | 8.09% |
| Indica II | 200 | 94.50% | 5.50% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 326 | 7.36% | 92.64% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900560007 | T->C | LOC_Os09g01810(LOC_Os09g01810.1) | Synonymous |