Detailed information of SNP:
|
SNP ID:
sf0900588112(Gbrowse)
Chromosome: chr09 Position: 588112 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 65.37% | 34.63% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 493 | 7.10% | 92.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 332 | 8.13% | 91.87% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900588112 | A->G | INTERGENIC | None |