Detailed information of SNP:
|
SNP ID:
sf0900589846(Gbrowse)
Chromosome: chr09 Position: 589846 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 66.29% | 33.71% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 485 | 8.25% | 91.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 324 | 9.88% | 90.12% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900589846 | T->C | INTERGENIC | None |