Detailed information of SNP:
|
SNP ID:
sf0900590523(Gbrowse)
Chromosome: chr09 Position: 590523 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 56.64% | 43.36% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 489 | 4.09% | 95.91% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 328 | 4.57% | 95.43% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900590523 | G->A | INTERGENIC | None |