Detailed information of SNP:
|
SNP ID:
sf0900605284(Gbrowse)
Chromosome: chr09 Position: 605284 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 90.75% | 9.25% |
| All Indica | 723 | 82.99% | 17.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 80.94% | 19.06% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 176 | 72.16% | 27.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900605284 | G->A | LOC_Os09g01900(LOC_Os09g01900.1) | Synonymous |