Detailed information of SNP:
|
SNP ID:
sf0900605355(Gbrowse)
Chromosome: chr09 Position: 605355 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 86.27% | 13.73% |
| All Indica | 753 | 78.62% | 21.38% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 352 | 78.98% | 21.02% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 191 | 67.54% | 32.46% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900605355 | C->T | LOC_Os09g01900(LOC_Os09g01900.1) | Non-Synonymous SNP |