Detailed information of SNP:
|
SNP ID:
sf0900605900(Gbrowse)
Chromosome: chr09 Position: 605900 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 86.58% | 13.42% |
| All Indica | 729 | 75.58% | 24.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 75.07% | 24.93% |
| Indica II | 203 | 91.63% | 8.37% |
| Indica Intermediate | 181 | 58.56% | 41.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900605900 | G->A | LOC_Os09g01900(LOC_Os09g01900.1) | INTRON |