Detailed information of SNP:
|
SNP ID:
sf0900607673(Gbrowse)
Chromosome: chr09 Position: 607673 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 68.12% | 31.88% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 478 | 14.23% | 85.77% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 318 | 17.30% | 82.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900607673 | G->A | INTERGENIC | None |