Detailed information of SNP:
|
SNP ID:
sf0900633520(Gbrowse)
Chromosome: chr09 Position: 633520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1330 | 78.35% | 21.65% |
| All Indica | 732 | 66.26% | 33.74% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 47 | 27.66% | 72.34% |
| Indica I | 342 | 64.91% | 35.09% |
| Indica II | 204 | 83.82% | 16.18% |
| Indica Intermediate | 186 | 49.46% | 50.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900633520 | C->T | INTERGENIC | None |