Detailed information of SNP:
|
SNP ID:
sf0900664681(Gbrowse)
Chromosome: chr09 Position: 664681 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 84.68% | 15.32% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 489 | 59.51% | 40.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 87 | 13.79% | 86.21% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900664681 | C->A | INTERGENIC | None |