Detailed information of SNP:
|
SNP ID:
sf0900668928(Gbrowse)
Chromosome: chr09 Position: 668928 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.60% | 43.40% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900668928 | C->T | INTERGENIC | None |