Detailed information of SNP:
|
SNP ID:
sf0900682858(Gbrowse)
Chromosome: chr09 Position: 682858 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 96.82% | 3.18% |
| All Indica | 765 | 94.25% | 5.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 353 | 92.35% | 7.65% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 200 | 95.00% | 5.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900682858 | C->T | LOC_Os09g01980(LOC_Os09g01980.1) | Non-Synonymous SNP |