Detailed information of SNP:
|
SNP ID:
sf0900685640(Gbrowse)
Chromosome: chr09 Position: 685640 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1264 | 69.86% | 30.14% |
| All Indica | 651 | 45.78% | 54.22% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 290 | 46.90% | 53.10% |
| Indica II | 195 | 46.15% | 53.85% |
| Indica Intermediate | 166 | 43.37% | 56.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900685640 | T->C | LOC_Os09g01980(LOC_Os09g01980.1) | Non-Synonymous SNP |