Detailed information of SNP:
|
SNP ID:
sf0900707420(Gbrowse)
Chromosome: chr09 Position: 707420 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 69.62% | 30.38% |
| All Indica | 745 | 82.42% | 17.58% |
| All Japonica | 492 | 51.83% | 48.17% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 352 | 85.51% | 14.49% |
| Indica II | 197 | 75.63% | 24.37% |
| Indica Intermediate | 196 | 83.67% | 16.33% |
| Temperate Japonica | 334 | 65.57% | 34.43% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 65 | 49.23% | 50.77% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900707420 | A->G | LOC_Os09g02020(LOC_Os09g02020.1) | Synonymous |