Detailed information of SNP:
|
SNP ID:
sf0900729086(Gbrowse)
Chromosome: chr09 Position: 729086 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 83.09% | 16.91% |
| All Indica | 793 | 71.50% | 28.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 370 | 62.16% | 37.84% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900729086 | G->A | INTERGENIC | None |