Detailed information of SNP:
|
SNP ID:
sf0900824661(Gbrowse)
Chromosome: chr09 Position: 824661 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 95.72% | 4.28% |
| All Indica | 792 | 97.47% | 2.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 37.29% | 62.71% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900824661 | C->T | INTERGENIC | None |