Detailed information of SNP:
|
SNP ID:
sf0900836068(Gbrowse)
Chromosome: chr09 Position: 836068 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 73.48% | 26.52% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 495 | 31.11% | 68.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 32.84% | 67.16% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900836068 | A->G | INTERGENIC | None |