Detailed information of SNP:
|
SNP ID:
sf0900893793(Gbrowse)
Chromosome: chr09 Position: 893793 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.01% | 35.99% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900893793 | T->C | INTERGENIC | None |