Detailed information of SNP:
|
SNP ID:
sf0900900867(Gbrowse)
Chromosome: chr09 Position: 900867 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 59.93% | 40.07% |
| All Indica | 781 | 95.26% | 4.74% |
| All Japonica | 493 | 0.00% | 100.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 195 | 94.36% | 5.64% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 65 | 0.00% | 100.00% |
| Group VI/Aromatic | 3 | 33.33% | 66.67% |
| Intermediate | 36 | 47.22% | 52.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900900867 | T->C | INTERGENIC | None |