Detailed information of SNP:
|
SNP ID:
sf0900935968(Gbrowse)
Chromosome: chr09 Position: 935968 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 96.37% | 3.63% |
| All Indica | 795 | 99.75% | 0.25% |
| All Japonica | 464 | 89.87% | 10.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 98.15% | 1.85% |
| Tropical Japonica | 78 | 53.85% | 46.15% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900935968 | G->A | INTERGENIC | None |