Detailed information of SNP:
|
SNP ID:
sf0901018108(Gbrowse)
Chromosome: chr09 Position: 1018108 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 59.15% | 40.85% |
| All Indica | 770 | 29.48% | 70.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 366 | 29.78% | 70.22% |
| Indica II | 208 | 33.17% | 66.83% |
| Indica Intermediate | 196 | 25.00% | 75.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901018108 | T->C | LOC_Os09g02460(LOC_Os09g02460.1) | Synonymous |