Detailed information of SNP:
|
SNP ID:
sf0901022936(Gbrowse)
Chromosome: chr09 Position: 1022936 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 94.96% | 5.04% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 489 | 88.75% | 11.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 88 | 54.55% | 45.45% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901022936 | C->T | INTERGENIC | None |