Detailed information of SNP:
|
SNP ID:
sf0901033419(Gbrowse)
Chromosome: chr09 Position: 1033419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 94.97% | 5.03% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 490 | 87.55% | 12.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 92 | 56.52% | 43.48% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901033419 | C->T | INTERGENIC | None |