Detailed information of SNP:
|
SNP ID:
sf0901135591(Gbrowse)
Chromosome: chr09 Position: 1135591 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 90.03% | 9.97% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 492 | 82.11% | 17.89% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 92 | 32.61% | 67.39% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901135591 | C->T | LOC_Os09g02630(LOC_Os09g02630.1) | INTRON |