Detailed information of SNP:
|
SNP ID:
sf0901201336(Gbrowse)
Chromosome: chr09 Position: 1201336 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 92.66% | 7.34% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 79.80% | 20.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 73.57% | 26.43% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901201336 | A->G | LOC_Os09g02690(LOC_Os09g02690.2) | INTRON |
| sf0901201336 | A->G | LOC_Os09g02690(LOC_Os09g02690.1) | INTRON |