Detailed information of SNP:
|
SNP ID:
sf0901297066(Gbrowse)
Chromosome: chr09 Position: 1297066 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 98.08% | 1.92% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 487 | 94.87% | 5.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901297066 | G->A | INTERGENIC | None |