Detailed information of SNP:
|
SNP ID:
sf0901331646(Gbrowse)
Chromosome: chr09 Position: 1331646 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 89.43% | 10.57% |
| All Indica | 795 | 95.97% | 4.03% |
| All Japonica | 493 | 80.53% | 19.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 91 | 31.87% | 68.13% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901331646 | C->T | LOC_Os09g02840(LOC_Os09g02840.1) | INTRON |