Detailed information of SNP:
|
SNP ID:
sf0901345489(Gbrowse)
Chromosome: chr09 Position: 1345489 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.22% | 5.78% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 490 | 85.31% | 14.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 89 | 46.07% | 53.93% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901345489 | G->A | LOC_Os09g02870(LOC_Os09g02870.1) | Synonymous |