Detailed information of SNP:
|
SNP ID:
sf0901384906(Gbrowse)
Chromosome: chr09 Position: 1384906 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 70.48% | 29.52% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 484 | 18.80% | 81.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 89 | 75.28% | 24.72% |
| Japonica Intermediate | 61 | 29.51% | 70.49% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901384906 | G->A | LOC_Os09g02950(LOC_Os09g02950.1) | INTRON |