Detailed information of SNP:
|
SNP ID:
sf0901390504(Gbrowse)
Chromosome: chr09 Position: 1390504 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 66.36% | 33.64% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 486 | 11.73% | 88.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 86 | 46.51% | 53.49% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901390504 | T->C | LOC_Os09g02960(LOC_Os09g02960.1) | Non-Synonymous SNP |