Detailed information of SNP:
|
SNP ID:
sf0901408319(Gbrowse)
Chromosome: chr09 Position: 1408319 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 64.21% | 35.79% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 482 | 8.51% | 91.49% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 333 | 0.60% | 99.40% |
| Tropical Japonica | 88 | 36.36% | 63.64% |
| Japonica Intermediate | 61 | 11.48% | 88.52% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901408319 | T->G | INTERGENIC | None |