Detailed information of SNP:
|
SNP ID:
sf0901409990(Gbrowse)
Chromosome: chr09 Position: 1409990 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 56.18% | 43.82% |
| All Indica | 775 | 85.68% | 14.32% |
| All Japonica | 473 | 3.81% | 96.19% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 360 | 86.94% | 13.06% |
| Indica II | 209 | 83.73% | 16.27% |
| Indica Intermediate | 206 | 85.44% | 14.56% |
| Temperate Japonica | 333 | 0.30% | 99.70% |
| Tropical Japonica | 77 | 18.18% | 81.82% |
| Japonica Intermediate | 63 | 4.76% | 95.24% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901409990 | C->T | INTERGENIC | None |