Detailed information of SNP:
|
SNP ID:
sf0901412043(Gbrowse)
Chromosome: chr09 Position: 1412043 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 56.47% | 43.53% |
| All Indica | 794 | 86.02% | 13.98% |
| All Japonica | 485 | 5.36% | 94.64% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 86 | 23.26% | 76.74% |
| Japonica Intermediate | 65 | 7.69% | 92.31% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901412043 | A->G | INTERGENIC | None |