Detailed information of SNP:
|
SNP ID:
sf0901430167(Gbrowse)
Chromosome: chr09 Position: 1430167 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 97.65% | 2.35% |
| All Indica | 793 | 97.10% | 2.90% |
| All Japonica | 488 | 97.95% | 2.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901430167 | A->G | LOC_Os09g03040(LOC_Os09g03040.1) | INTRON |