Detailed information of SNP:
|
SNP ID:
sf0901447401(Gbrowse)
Chromosome: chr09 Position: 1447401 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 65.60% | 34.40% |
| All Indica | 789 | 91.38% | 8.62% |
| All Japonica | 496 | 20.36% | 79.64% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901447401 | A->T | LOC_Os09g03060(LOC_Os09g03060.1) | Synonymous |