Detailed information of SNP:
|
SNP ID:
sf0901468520(Gbrowse)
Chromosome: chr09 Position: 1468520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 95.74% | 4.26% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 465 | 88.39% | 11.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 74 | 39.19% | 60.81% |
| Japonica Intermediate | 60 | 88.33% | 11.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901468520 | C->T | LOC_Os09g03090(LOC_Os09g03090.1) | INTRON |