Detailed information of SNP:
|
SNP ID:
sf0901472638(Gbrowse)
Chromosome: chr09 Position: 1472638 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 51.10% | 48.90% |
| All Indica | 792 | 86.99% | 13.01% |
| All Japonica | 495 | 0.40% | 99.60% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901472638 | G->A | INTERGENIC | None |