Detailed information of SNP:
|
SNP ID:
sf0901473384(Gbrowse)
Chromosome: chr09 Position: 1473384 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 97.44% | 2.56% |
| All Indica | 795 | 98.11% | 1.89% |
| All Japonica | 450 | 96.44% | 3.56% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 61 | 81.97% | 18.03% |
| Japonica Intermediate | 59 | 94.92% | 5.08% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901473384 | A->G | INTERGENIC | None |