Detailed information of SNP:



SNP ID: sf0901481230(Gbrowse)

Chromosome: chr09

Position: 1481230
Major allele: A

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1417 70.92% 29.08%
All Indica798 97.87% 2.13%
All Japonica496 22.58% 77.42%
Aus67 100.00% 0.00%
Indica I374 97.86% 2.14%
Indica II213 99.06% 0.94%
Indica Intermediate211 96.68% 3.32%
Temperate Japonica334 3.59% 96.41%
Tropical Japonica94 76.60% 23.40%
Japonica Intermediate68 41.18% 58.82%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0901481230 C->A LOC_Os09g03110(LOC_Os09g03110.1) Non-Synonymous SNP