Detailed information of SNP:
|
SNP ID:
sf0901528324(Gbrowse)
Chromosome: chr09 Position: 1528324 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 56.01% | 43.99% |
| All Indica | 771 | 83.79% | 16.21% |
| All Japonica | 485 | 6.19% | 93.81% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 357 | 85.43% | 14.57% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 203 | 81.28% | 18.72% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 84 | 29.76% | 70.24% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901528324 | C->T | LOC_Os09g03180(LOC_Os09g03180.1) | Synonymous |