Detailed information of SNP:
|
SNP ID:
sf0901535378(Gbrowse)
Chromosome: chr09 Position: 1535378 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 67.26% | 32.74% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 487 | 14.99% | 85.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 90 | 56.67% | 43.33% |
| Japonica Intermediate | 63 | 22.22% | 77.78% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901535378 | T->C | LOC_Os09g03190(LOC_Os09g03190.1) | INTRON |