Detailed information of SNP:
|
SNP ID:
sf0901535604(Gbrowse)
Chromosome: chr09 Position: 1535604 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 97.37% | 2.63% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 487 | 94.25% | 5.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 88 | 95.45% | 4.55% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901535604 | C->A | LOC_Os09g03190(LOC_Os09g03190.1) | INTRON |