Detailed information of SNP:
|
SNP ID:
sf0901554655(Gbrowse)
Chromosome: chr09 Position: 1554655 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 98.37% | 1.63% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 96.13% | 3.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 75.00% | 25.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901554655 | T->C | LOC_Os09g03220(LOC_Os09g03220.1) | Non-Synonymous SNP |