Detailed information of SNP:
|
SNP ID:
sf0901554680(Gbrowse)
Chromosome: chr09 Position: 1554680 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 97.88% | 2.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 494 | 95.55% | 4.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901554680 | G->A | LOC_Os09g03220(LOC_Os09g03220.1) | SNPs that introduce stop codons |